MANIFEST This file $Id: MANIFEST,v 1.41 2005/09/24 11:20:28 eric Exp $ Makefile.PL Makefile generator README Get you started with this package #README.html you should read this too test.pl * make test stuff test.pm configuration feedback into the tests META.yml Module meta-data (added by MakeMaker) Algae2.pm a parser/evaluator for the algae2 language AlgaeCompileTree.pm RDF query objects AlgaeParser.pm parse the Algae2 language AlgaeParser.yp a Parse::Yapp grammer to generate AlgaeParser.pm Atoms.pm provide unique objects for RDF tokens (URI, string, genid, statement) #Attributions.html HTML description of the Attributions idea #RDF-ImpNotes.html implementation notes for RDF::Parser #RdfDB.html html description of RdfDB SparqlParser.pm parse the SPARQL language SparqlParser.yp a Parse::Yapp grammer to generate SparqlParser.pm CGIApp.pm Common CGI functions for RDF apps DotSerializer.pm serialize RDF graphs in dot (AT&T Graphvis) format EmitterInterface.pm interface to fill an RDF database FingerDB.pm RDF DB mapping to finger protocol FileSystemDB.pm RDF DB mapping to a directory structure N3Parser.pm parse the N3 language N3Parser.yp a Parse::Yapp grammer to generate N3Parser.pm N3Serializer.pm serialize RDF graphs in Notation 3 format NTriplesSerializer.pm serialize RDF graphs in nTriples format XmlParser.pm parse RDF/XML and fill an RdfDB RdalCompileTree.pm Compile tree for RDAL Parser RdalParser.pm Parse RDAL schema annotations RdalParser.yp a Parse::Yapp grammer to generate RdalParser.pm RdfApp.pm common functionality for some W3C CLI RDF utils @@@ RdfDB.pm database to store RDF triples @@@ RdqlParser.pm parse the RDQL language RdqlParser.yp a Parse::Yapp grammer to generate RdqlParser.pm ResultSet.pm query state (results and proofs) SeRQLParser.pm parse the SeRQL language SeRQLParser.yp a Parse::Yapp grammer to generate SeRQLParser.pm SPARQLXmlRenderer.pm render SPARQL XML results format SqlDB.pm RdfDB interface to SQL tables StatementsSerializer.pm serialize RDF graphs in line-oriented statements format #Swordfish.pl infobot modules for performing Algae queries TAPDB.pm RdfDB interface to Stanford University's TAP database XmlSerializer.pm serialize RDF graphs as RDF/XML YesDB.pm an agreeable RdfDB bin/algae command line RDF query (and rules) program DbMeta/MicroArray.pm sampe database configuration DbMeta/Uniprot.pm sampe database configuration DbMeta/ScreeningAssay.pm sampe database configuration DbMeta/ChemStructure.pm sampe database configuration DbMeta/MouseToxicity.pm sampe database configuration test/Ephemoral0-alg.sh Logic test on ephemoral DB test/Annotation0-alg.sh Simple input validation query on Annotation file test/RDQL0-alg.sh RDQL tester test/SPARQL0-alg.sh SPARQL tester test/SPARQL1-alg.sh info about discovered nodes #test/SPARQL2-alg.sh info about a node #test/SPARQL-Optional2-alg.sh complex disjunction test test/SeRQL0-alg.sh SeRQL tester test/Disjunction0-alg.sh Single optional arc test/Disjunction1-alg.sh Single optional arc test/Disjunction2-alg.sh Single optional arc test/Disjunction3-alg.sh Single optional arc test/Annotation0-alg.sh Simple input validation query on Annotation file test/Optional0-alg.sh Single optional arc test/Optional1-alg.sh Optionally disjoint arcs test/Optional2-alg.sh Nested optionals test/ProfileQuery0-alg.sh requires a profile that queries profiles test/Hostname0-alg.sh test extensible value testing test/datatype0-alg.sh xsd:datatypes test/Annotation1-alg.sh Insert annotation into database and simple input query test/Annotation2-alg.sh Flexible Annotea query test/Annotation3-alg.sh Inept Annotea query. test/Annotation4-alg.sh Ambitious Annotea query. test/OrderTracking0-alg.sh simple access to SQL databases test/OrderTracking1-alg.sh Billing department view test/OrderTracking3-alg.sh special orders with shipping addresses test/OrderTracking4-alg.sh Shipping department view, ship address for orders for a day test/OrderTracking5-alg.sh Shipping department view for one order test/OrderTracking6-alg.sh Shipping department view for one customer/order test/Federate0-alg.sh Product Review test/ProfileQuery0-alg.sh test profile reflection test/globTest1-alg.sh use reduced-expressivity form of wildcards test/Finger0-alg.sh test/FileSystem0-alg.sh test/ToxicAssoc0-alg.sh test/ToxicAssoc0.alg test/fwruleTest0-alg.sh test a single transitive inference test/fwruleTest1-alg.sh test variable predicate and variable subject/object test/bookmarkRules.alg a couple rules needed in the bookmark protocol test/owl.alg some owl rules test/rdfs.alg some RDFS rules test/makeGenericTripleStore.sql table construction test/makeOrderTracking.sql table construction test/makeToxicAssoc.sql table construction test/genericTripleStore.prop properties file for the RDF triple store test/OrderTracking.prop properties file for the OrderTracking database test/ChemStructure.prop properties file for the ToxicAssoc database test/MicroArray.prop properties file for the ToxicAssoc database test/MouseToxicity.prop properties file for the ToxicAssoc database test/ScreeningAssay.prop properties file for the ToxicAssoc database test/Uniprot.prop properties file for the ToxicAssoc database OrderTrackingObjects.pm description of the OrderTracking database test/subCategoryExample.rdf test data test/Annotation1052587433.529382.rdf test data test/Annotation1052587433.529382b.rdf test data test/Federate0-jwlry.rdf test data test/Federate0-reviews.rdf test data test/Federate0-reviews.rdf test data test/algaeTest.rdf test data